Latest Publications

Ishihara, T., Tsugawa, H., Iwanami, S., Chang, J.-C., Minoda, A., and Arita, M. Transcriptomic and lipidomic analysis of aging-associated inflammatory signature in mouse liver. Inflammation and Regeneration (Inflamm. Regen.) 45, 13, 2025.

Koelmel, J. P., Lin, E. Z., Chang, P., Johnson, E., Stelben, P., Liu, S., Nishida, K., Tsugawa, H., Lin, A., Newton, S., Casey, J. S., Nikiforov, V., Roberts, D., Aksenov, A., Okeme, J., Metayer, C., Vieira, V. M., Manz, K. E., Braun, J. M., Pennell, K. D., Robey, N. M., Bangma, J., Strynar, M., Townsend, T. G., Bowden, J. A., and Godri Pollitt, K. J. Shedding light on PFAS dark matter using a novel GC-HRMS approach. Environmental Science & Technology (Environ. Sci. Technol.) 59, 25296–25308, 2025.

Neumann, S., Meier, R., Wenk, M., Elapavalore, A., Nishioka, T., Schulze, T., Stravs, M., Tsugawa, H., Matsuda, F., and Schymanski, E. L. MassBank: an open and FAIR mass spectral data resource. Nucleic Acids Research (Nucleic Acids Res.) 54, D601–D606, 2026.

Kosaka, S., Fukushima, J., Takeuchi, N., Miyamoto, N., de Campo, L., Kawano, R., and Nishimura, T. Self-assembled block copolymer domains as macromolecular ion transport systems in biological membranes.Chemical Science (Chem. Sci.), 16, 16522–16533, 2025.

Higashi, R., Shibayama, I., Ji, J., Ren, T., Kiiski, I., Takeuchi, N., and Kawano, R. Molecular diagnostics for infectious disease and cancer based on glass capillary nanopore sensing. Current Opinion in Biotechnology (Curr. Opin. Biotechnol.), 97, 103394, 2026.

Yuki Takechi‑Haraya, Takashi Ohgita, Akiko Usui, Kazuchika Nishitsuji, Kenji Uchimura, Yasuhiro Abe, Ryuji Kawano, Monika I. Konaklieva, Mart Reimund, Alan T. Remaley, Yoji Sato, Ken‑ichi Izutsu, Hiroyuki Saito. Structural flexibility of apolipoprotein E-derived arginine-rich peptides improves their cell penetration capability Scientific Reports 2023, 13, 19396, DOI: 10.1038/s41598-023-46754-0

Yamamoto H, Elbadawy M, Tsunedomi R, Maeda N, Nagano H, Ishihara Y, Abugomaa A, Shiota Y, Yu TW, Liu Y, Nagashima Y, Kobayashi Y, Matsui R, Uomoto S, Kobayashi M, Yoshida T, Shibutani M, Kobayashi T, Inoue M, Higashinaka M, Fukushima R, Azakami D, Uchide T, Shinohara Y, Yamawaki H, Kaneda M, Usui T, Sasaki K. Novel organoid-based exploration reveals the role of LMTK3/FADS2 signaling in metastatic breast cancer progression in felines and humans. Scientific Reports. 15: 45016. 2025.

Kanaya, A., Nabeta, R., Yu, T., Yamamoto, H., Liu, YS., Abugomaa, A., Elbadawy, M., Shimoda, K., Usui, T., Uchide, T. Generation and characterization of feline colorectal adenocarcinoma organoids as a preclinical model. JOURNAL OF VETERINARY MEDICAL SCIENCE (J Vet Med Sci.), 87.7, 8752-762, 2025

Ueda, T., Chikaoka, Y., Matsuoka, S., Miyashita, N., Ohshima, K., Habuka, Y., Naoi, W., Iwama, E., Simon, P., and Naoi, K., Effect of SBPBF4 addition in Acetonitrile- and Linear Carbonate-based Electrolytes: Improving Voltage Stability and Reducing Gas Evolution in Supercapacitors, Electrochimica Acta (Electrochim. Acta), Accepted on 1st April 2025, Available online on 3rd April 2025, DOI: 10.1021/acsenergylett.5c00540

Alan K Jarmusch, Allegra T Aron, Daniel Petras, Vanessa V Phelan, Wout Bittremieux, Deepa D Acharya, Mohammed MA Ahmed, Anelize Bauermeister, Matthew J Bertin, Paul D Boudreau, Ricardo M Borges, Benjamin P Bowen, Christopher J Brown, Fernanda O Chagas, Kenneth D Clevenger, Mario SP Correia, William J Crandall, Max Crusemann, Tito Damiani, Oliver Fiehn, Neha Garg, William H Gerwick, Jeffrey R Gilbert, Daniel Globisch, Paulo Wender P Gomes, Steffen Heuckeroth, C Andrew James, Scott A Jarmusch, Sarvar A Kakhkhorov, Kyo Bin Kang, Roland D Kersten, Hyunwoo Kim, Riley D Kirk, Oliver Kohlbacher, Eftychia E Kontou, Ken Liu, Itzel Lizama-Chamu, Gordon T Luu, Tal Luzzatto Knaan, Michael T Marty, Andrew C McAvoy, Laura-Isobel McCall, Osama G Mohamed, Omri Nahor, Timo HJ Niedermeyer, Trent R Northen, Kirsten E Overdahl, Tomas Pluskal, Johannes Rainer, Raphael Reher, Elys Rodriguez, Timo T Sachsenberg, Laura M Sanchez, Robin Schmid, Cole Stevens, Zhenyu Tian, Ashootosh Tripathi, Hiroshi Tsugawa, Kozo Nishida, Yuki Matsuzawa, Justin JJ van der Hooft, Andrea Vicini, Axel Walter, Tilmann Weber, Quanbo Xiong, Tao Xu, Haoqi Nina Zhao, Pieter C Dorrestein, Mingxun Wang. A Universal Language for Finding Mass Spectrometry Data Patterns. Nature Methods. 2025: 22, 9, 1995-1995: DOI10.1038/s41592-025-02785-1

UenoK, Tsukakoshi K, Takeuchi N, Inaba S, Idili A, Porchetta A, Ricci F, Ikebukuro K, Bright and pH-sensitive Baby Spinach aptamer with RNA triplex, Nucleic Acids Res. 2025: 53, 11: DOI10.1093/nar/gkaf151

Zejun Cheng, Haoshuai Pu, Wei Zheng, Pu Miao, Jiaming Wei, Zhe Zhao, Xiaomei Zhang, Xianghan Cheng, Koki Toyota, Jianqiang Xu, Xiaobo Huang, Wenbang Hou. Relationship Between the Density of Ditylenchus destructor in Soil at Harvest Evaluated Using Real-Time PCR and Sweetpotato Disease Incidence. Plant Disease. 2025: 109, 8, 1640-1647

Tang Q, Ojiro R, Ozawa S, Zou X, Nakahara J, Nakao T, Koyanagi M, Jin M, Yoshida T, Shibutani M. DNA methylation-altered genes in the rat hippocampal neurogenic niche after continuous exposure to amorphous curcumin. J Chem Neuroanat. 2024 Apr;137:102414. doi: 10.1016/j.jchemneu.2024.102414.

Ozawa S, Ojiro R, Tang Q, Zou X, Jin M, Yoshida T, Shibutani M. Involvement of multiple epigenetic mechanisms by altered DNA methylation from the early stage of renal carcinogenesis before proliferative lesion formation upon repeated administration of ochratoxin A. Toxicology. 2024 Aug;506:153875. doi: 10.1016/j.tox.2024.153875.

Zou X, Tang Q, Ojiro R, Ozawa S, Shobudani M, Sakamaki Y, Ebizuka Y, Jin M, Yoshida T, Shibutani M. Increased spontaneous activity and progressive suppression of adult neurogenesis in the hippocampus of rat offspring after maternal exposure to imidacloprid. Chem Biol Interact. 2024 Aug 25;399:111145. doi: 10.1016/j.cbi.2024.111145.

Shobudani M, Sakamaki Y, Karasawa A, Ojiro R, Zou X, Tang Q, Ozawa S, Jin M, Yoshida T., Shibutani M. Metabolic shift as a compensatory response to impaired hippocampal neurogenesis after developmental exposure to sodium fluoride in rats. Acta Histochem. 2024 Dec;126(8):152204. doi: 10.1016/j.acthis.2024.152204.

Kobayashi M, Usui T, Elbadawy M, Kigata T, Kaneda M, Murakami T, Kozono T, Itoh Y, Shibutani M, Yoshida T. Anorectal Remodeling in the Transitional Zone with Increased Expression of LGR5, SOX9, SOX2, and Keratin 13 and 5 in a Dextran Sodium Sulfate-Induced Mouse Model of Ulcerative Colitis. Int J Mol Sci. 2024 Nov 26;25(23):12706. doi: 10.3390/ijms252312706.

Elbadawy M, Saito N, Kato Y, Hayashi K, Abugomaa A, Kobayashi M, Yoshida T, Shibutani M, Kaneda M, Yamawaki H, Sasaki K, Usui T, Omatsu T. Establishment of a bat lung organoid culture model for studying bat-derived infectious diseases. Sci Rep. 2025 Feb 3;15(1):4035. doi: 10.1038/s41598-025-88621-0.

Septian Fauzi Dwi Saputra, Budi Indra Setiawan, Chusnul Arief, Satyanto Krido Saptomo, Atiqotun Fitriyah, Tasuku KATO, Assessment of Future Water Availability and Seasonal Patterns of Dry Seasons under Climate Change in Cidanau Watershed Banten Province, Indonesia, Journal of Hydrology: Regional Studies 59 102344,2025 (accepted 24 March 2025) 10.1016/j.ejrh.2025.102344

Elbadawy, M., Saito, N., Kato, Y., Hayashi, K., Abugomaa, A., Kobayashi, M., Yoshida, T., Shibutani, M., Kaneda, M., Yamawaki, H., Sasaki, K., Usui, T., Omatsu, T. Establishment of a bat lung organoid culture model for studying bat-derived infectious diseases Establishment of an experimental model of canine apocrine gland anal sac adenocarcinoma organoid culture using a three-dimensional culture method. Scientific Reports 15: 61084035, 2025.